PMC3680174/Resources

Example resource collection for PMC3680174.

{{#scite:PMC2483364

|type=journal
|authors=Tsesmetzis N, Couchman M, Higgins J, Smith A, Doonan JH, Seifert GJ, Schmidt EE, Vastrik I, Birney E, Wu G, D’Eustachio P, Stein LD, Morris RJ, Bevan MW, Walsh SV
|author=Nicolas Tsesmetzis,Matthew Couchman,Janet Higgins,Alison Smith,John H. Doonan,Georg J. Seifert,Esther E. Schmidt,Imre Vastrik,Ewan Birney,d Guanming Wu,Peter D'Eustachio,Lincoln D. Stein,Richard J. Morris,Michael W. Bevan,Sean V. Walsh|+sep=,
|doi=10.1105/tpc.108.057976
|title=Arabidopsis reactome: a foundation knowledgebase for plant systems biology -- abc
|journal=Plant Cell
|year=2008
|volume=20
|pages=1426–1436
|pmcid=PMC2483364

}}{{#scite:PMID19933213

|type=journal
|citation text=Lysenko A, Hindle MM, Taubert J, Saqi M, Rawlings CJ. Data integration for plant genomics—exemplars from the integration of Arabidopsis thaliana databases. Brief Bioinform. 2009;10:676–693.
|doi=10.1093/bib/bbp047

}}{{#scite:PMID18714290

|type=journal
|citation text=Stein LD. Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges. Nat Rev Genet. 2008;9:678–688. -- abc 123 789
|pubmed=http://www.ncbi.nlm.nih.gov/pubmed/18714290

}}{{#scite:PMID18358788

|type=journal
|citation text=Goble C, Stevens R. State of the nation in data integration for bioinformatics. J Biomed Inform. 2008;41:687–693. doi: 10.1016/j.jbi.2008.01.008.
|doi=10.1016/j.jbi.2008.01.008
|pmid=http://www.ncbi.nlm.nih.gov/pubmed/18358788

}}{{#scite:W3CRDF

|type=url
|citation text=RDF/XML Syntax Specification (Revised) http://www.w3.org/TR/REC-rdf-syntax/

}}{{#scite:W3CSPARQL

|type=url
|citation text=SPARQL Query Language for RDF. http://www.w3.org/TR/rdf-sparql-query/

}}{{#scite:W3COWL

|type=url
|citation text=OWL Web Ontology Language Overview. http://www.w3.org/TR/owl-features/

}}{{#scite:PMC2238962

|type=journal
|citation text=Swarbreck D, Wilks C. The Arabidopsis Information Resource (TAIR): gene structure and function annotation. Nucleic Acids Res. 2008;36:D1009–D1014.
|pmcid=PMC2238962

}}{{#scite:PMC2238951

|type=journal
|citation text=Liang C, Jaiswal P. Gramene: a growing plant comparative genomics resource. Nucleic Acids Res. 2008;36:D947–D953.
|pmcid=PMC2238951

}}{{#scite:PMC1255983

|type=journal
|citation text=McLaren CG, Bruskiewich RM. The International Rice Information System. A platform for meta-analysis of rice crop data. Plant Physiol. 2005;139:637–642. doi: 10.1104/pp.105.063438.
|doi=10.1104/pp.105.063438
|pmcid=PMC1255983

}}{{#scite:PMC2518694

|type=journal
|citation text=Lawrence CJ, Harper LC. MaizeGDB: The Maize Model Organism Database for Basic, Translational, and Applied Research. Int J Plant Genomics. 2008;2008:1–10.
|pmcid=PMC2518694

}}{{#scite:PMC165507

|type=journal
|citation text=Samson D, Legeai F. GénoPlante-Info (GPI): a collection of databases and bioinformatics resources for plant genomics. Nucleic Acids Res. 2003;31:179–182. doi: 10.1093/nar/gkg060.
|doi=10.1093/nar/gkg060
|pmcid=PMC165507

}}{{#scite:PMID18077472

|type=journal
|citation text=Rubin DL, Shah NH. Biomedical ontologies: a functional perspective. Brief Bioinform. 2008;9:75–90.
|pupmed=http://www.ncbi.nlm.nih.gov/pubmed/18077472

}}{{#scite:PMC3114010

|type=journal
|citation text=Chepelev LL, Dumontier M. Semantic Web integration of Cheminformatics resources with the SADI framework. J Cheminform. 2011;3:16. doi: 10.1186/1758-2946-3-16.
|doi=10.1186/1758-2946-3-16
|pmcid=PMC3114010

}}{{#scite:PMC2375972

|type=journal
|citation text=Bruskiewich R, Senger M, Davenport G, Ruiz M, Rouard M. The generation challenge programme platform: semantic standards and workbench for crop science. Int J Plant Genomics. 2008;2008:369601.
|pmcid=PMC2375972

}}{{#scite:PMC3355756

|type=journal
|citation text=Goff SA, McKay S, Stapleton AE, Hanlon M, Mock S, Helmke M, Kubach A, Noutsos C, Gendler K, Feng X, Welch SM, O’Meara B, Brutnell T, Leebens-Mack J, Akoglu A. The iPlant collaborative: cyberinfrastructure for plant biology. Front Plant Sci. 2011;2:34.
|pmcid=PMC3355756

}}{{#scite:Wilkinson, Vandervalk, and McCarthy 2009

|type=journal
|citation text=Wilkinson MD, Vandervalk B, McCarthy L. SADI Semantic Web Services – ‘cause you can’t always GET what you want! 2009. pp. 13–18. (Services Computing Conference, 2009 APSCC 2009 IEEE Asia-Pacific: 7-11 Dec. 2009).

}}{{#scite:PMC2761904

|type=journal 
|citation text=Gessler D, Schiltz G. SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services. BMC Bioinformatics. 2009;10:309. doi: 10.1186/1471-2105-10-309.
|doi=10.1186/1471-2105-10-309
|pmcid=PMC2761904

}}{{#scite:PMC3212890

|type=journal
|citation text=Wilkinson MD, Vandervalk B, McCarthy L. The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation. J Biomed Semantics. 2011;2:8. doi: 10.1186/2041-1480-2-8.
|doi=10.1186/2041-1480-2-8
|pmcid=PMC3212890

}}{{#scite:PMID18238804

|type=journal
|citation text=Wilkinson MD, Senger M, Kawas E, Bruskiewich R, Gouzy J, Noirot C, Bardou P, Ng A, Haase D, Saiz Ede A. Interoperability with Moby 1.0–it's better than sharing your toothbrush! Brief Bioinform. 2008;9(3):220–231. --aad
|pubmed=http://www.ncbi.nlm.nih.gov/pubmed/

}}{{#scite:PMC3040533

|type=journal
|citation text=Wilkinson M, McCarthy L. SADI, SHARE, and the in silico scientific method. BMC Bioinform. 2010;11:S7. -- abcdsd
|pmcid=PMC3040533

}}